All Classes and Interfaces

Class	Description
AbstractGraph<B>	The base class for all graphical representations.
AbstractGraph.Controller	The base interface for communicating with the controller of all graphs.
AbstractGraph.GraphStyle	The style features for graphs.
AbstractGraph.HasTrajectory	Graphs that show trajectories and support exporting their data should implement this interface.
AbstractGraph.MyContext2d	Create custom Context2d that admits drawing dashed lines.
AbstractGraph.Shifter	Graphs that support shifting of their view should implement this interface.
AbstractGraph.Shifting	Graphs that support shifting should implement this interface.
AbstractGraph.Zoomer	Graphs that support zooming should implement this interface.
AbstractGraph.Zooming	Graphs that support zooming should implement this interface.
AbstractView	The parent class of all panels that provide graphical representations the state of the current EvoLudo model.
AbstractView.ExportType	The available export data types: SVG scalable vector graphics format, svg PDF portable document format, pdf (not yet implemented). EPS encapsulated postscript format, eps (not yet implemented). PNG portable network graphics format, png STAT_DATA statistics data as comma separated list, csv TRAJ_DATA trajectory data as comma separated list, csv (not yet implemented). STATE current state of simulation, plist
Advection	Numerical integration of partial differential equations for reaction-diffusion-advection systems based on Euler's method (fixed step size).
AffineTransform	The AffineTransform class represents a 2D affine transform that performs a linear mapping from 2D coordinates to other 2D coordinates that preserves the "straightness" and "parallelness" of lines.
ArrayMath	Collection of convenience methods for mathematical operations, including array manipulations and statistics.
ATBT	The module for investigating the evolutionary dynamics in asymmetric 2×2 games.
BasicTooltipProvider	Graphs that provide basic tooltips should implement this interface.
CDL	Cooperation in voluntary (non-linear) public goods interactions.
CDLP	Cooperation in voluntary (non-linear) public goods interactions with peer punishment.
CDLPQ	Cooperation in voluntary (non-linear) public goods interactions with peer and pool punishment.
Centipede	The Centipede class provides an EvoLudo module for the centipede game.
ChangeListener	All ChangeListener's get informed about state changes of the core of EvoLudo models.
ChangeListener.PendingAction	The GUI or engine can request running models to suspend execution and process a pendingAction.
CLabour	The module for the evolution of two behavioural traits.
CLOParser	Parser for command line options.
CLOProvider	Interface for classes that that to provide command line options for configurable parameters.
CLOption	Command line option and argument.
CLOption.Argument	Types of command line options: REQUIRED required argument.
CLOption.Category	Handle different categories of options.
CLOption.CLODelegate	Interface to process command line arguments
CLOption.Key	The interface for keys of command line options.
CLOption.SimpleKey	Simple key for command line options.
ColorMap<T>	Interface for mapping data to colors.
ColorMap.Gradient<T>	Abstract super class for color maps following a gradient.
ColorMap.Gradient1D<T>	One dimensional color gradient spanning two or more colors
ColorMap.Gradient2D<T>	Two dimensional color gradient with one color for each dimension.
ColorMap.GradientND<T>	Color gradient for N dimensional data with one color for each dimension.
ColorMap.Hue<T>	Color gradient following the hue.
ColorMap.Index<T>	Associates integer indices with colors.
ColorMap3D	Coloring3D is a wrapper class for different schemes to map data onto colors for 3D visualization using WebGL.
ColorMap3D.Gradient1D	One dimensional color gradient spanning two or more colors
ColorMap3D.Gradient2D	Two dimensional color gradient with one color for each dimension.
ColorMap3D.GradientND	N dimensional color gradient with one color for each dimension.
ColorMap3D.Hue	Color gradient following the hue.
ColorMap3D.Index	Associates integer indices with colors.
ColorMapCSS	Coloring is a wrapper class for different schemes to map data onto colors for 2D visualizations using the HTML5 canvas element.
ColorMapCSS.Gradient1D	One dimensional color gradient spanning two or more colors
ColorMapCSS.Gradient2D	Two dimensional color gradient with one color for each dimension.
ColorMapCSS.GradientND	N dimensional color gradient with one color for each dimension.
ColorMapCSS.Hue	Color gradient following the hue.
ColorMapCSS.Index	Associates integer indices with colors.
Combinatorics	Collection of convenience methods for mathematical operations dealing with combinatorics.
Console	The view to display the console log.
Console.Log	The console log widget.
ContextMenu	Context menu extension to GWT's user interface.
ContextMenu.Listener	Listener interface for widgets that offer context menus.
ContextMenu.Provider	Provider interface for classes that are responsible for supplying the contents of the context menu.
ContextMenuCheckBoxItem	Component of the context menu extension to GWT's user interface.
ContextMenuItem	Component of the context menu extension to GWT's user interface.
ContextMenuSeparator	Component of the context menu extension to GWT's user interface.
Continuous	Common interface for all models with continuous strategy sets.
Continuous	Parent class of all EvoLudo modules with one or more continuous traits.
Continuous.Benefits	Selected benefit functions to translate continuous traits into payoffs.
Continuous.Costs	Selected cost functions to translate continuous traits into payoffs.
CSD	The module for investigating the evolutionary dynamics of the continuous snowdrift game, or more generally, interactions among pairs of individuals with continuous traits.
Data	Data types that are handled by the model.
DemesTBT	Simulations of 2x2 games in deme structured populations.
Discrete	Common interface for all models with discrete strategy sets.
Discrete	Parent class of all EvoLudo modules with discrete strategy sets.
Distribution	The view to display the distribution of continuous traits.
Distributions	Collection of convenience methods for mathematical operations dealing with distributions.
EcoPGG	Cooperation in ecological public goods interactions.
EvoLudo	Interface with the outside world.
EvoLudo.ColorModelType	Coloring methods for multiple continuous traits.
EvoLudo.Directive	The interface to execute commands in a manner that is agnostic to the implementation details regarding GWT or JRE environments.
EvoLudoGWT	GWT specific implementation of EvoLudo controller.
EvoLudoTrigger	Create button to launch an EvoLudo lab in a semi-transparent overlay.
EvoLudoWeb	Entry point classes define onModuleLoad().
EvoLudoWeb.EvoLudoWebBinder	GWT magic to define GUI elements (see EvoLudoWeb.ui.xml).
Features	Interface to query features of the Module.
Features.Groups	All modules that admit interactions in larger groups (as opposed to interactions in pairs) should implement this interface.
Features.Pairs	All modules that admit interactions in pairs (as opposed to larger groups) should implement this interface.
Features.Static	Interface that all modules with static fitness/payoffs should implement.
FixationData	EXPERIMENTAL: should mature into data structure useful for statistics
Formatter	Collection of convenience methods for formatting numbers, vectors and matrices as Strings.
FullscreenChangeEvent	Represents a native fullscreenchange event.
FullscreenChangeHandler	Handler interface for FullscreenChangeEvent events.
Functions	Collection of mathematical functions.
GenericPop<T,N,G>	The abstract parent class for views that display the configuration of the current state of the model in 2D or 3D.
GenericPopGraph<T,N>	The base class for population graphs.
GenericPopGraph.PopGraphController	The interface for communicating with graphs that show nodes, e.g.
Geometry	Instances of Geometry represent the interaction and/or competition structure of the population.
Geometry.Type	The types of graph geometries.
Git	The interface to provide access to the Git.properties file.
HasDistribution	Modules that implement the HasDistribution interface request a graphical view to visualize the density distribution of data in multiple dimensions in their GUI: Distribution for GWT and MVCDistr, MVC2Distr for JRE modules with one or two continuous traits, respectively.
HasDistribution.Strategy	Modules that implement the HasDistribution.Strategy interface include a graphical view that depicts the density distribution of strategic traits over time in their GUI.
HasFullscreenChangeHandlers	A widget that implements this interface provides registration for FullscreenChangeHandler instances.
HasHistogram	Modules that implement the HasHistogram interface request a graphical view to depicts a histogram of data in their GUI: Histogram in GWT and MVCTraitHistogram, MVFitHistogram in JRE for a single continuous trait or the fitness distribution, respectively.
HasHistogram.Degree	Modules that implement the HasHistogram.Degree interface include histograms of the degree distribution of the population geometry.
HasHistogram.Fitness	Modules that implement the HasHistogram.Fitness interface include histograms of fitness distributions.
HasHistogram.StatisticsProbability	Modules that implement the HasHistogram.StatisticsProbability interface must be capable of running statistics over multiple runs and include histograms of fixation probabilities.
HasHistogram.StatisticsStationary	Modules that implement the HasHistogram.StatisticsStationary interface must be capable of generate histograms of the number of times particular configurations (frequencies of strategies) are visited, which eventually converges to a stationary distributions in ergodic settings.
HasHistogram.StatisticsTime	Modules that implement the HasHistogram.StatisticsTime interface must be capable of running statistics over multiple runs and include histograms of fixation times.
HasHistogram.Strategy	Modules that implement the HasHistogram.Strategy interface include histograms of strategy distributions.
HasInputHandlers	A widget that implements this interface provides registration for InputHandler instances.
HasMean	Modules that implement the HasMean interface request a graphical view to visualize the mean state of the population as a function of time in their GUI: Mean for GWT and MVDMean, MVCMean for JRE.
HasMean.Fitness	Modules that implement this interface request a LineGraph that depicts the mean fitness of the population.
HasMean.Strategy	Modules that implement this interface request a LineGraph that depicts the mean strategies of the population.
HasPhase2D	Modules that implement the HasPhase2D interface request a graphical view to visualize the mean state of the population in a 2D (projection) of the phase plane as a function of time in their GUI: Phase2D for GWT and MVDPhase2D for JRE.
HasPhase2D.Data2Phase	Interface for providing custom mappings from data to 2D phase plane projections.
HasPop2D	Modules that implement the HasPop2D interface request a graphical view to visualize a 2D representation of the geomtery of the population in their GUI: Pop2D for GWT and MVPop2D for JRE.
HasPop2D.Fitness	Modules that implement the HasPop2D.Fitness interface include 2D graphical visualizations of the geometry of the population where nodes display the color coded fitness of each individual.
HasPop2D.Strategy	Modules that implement the HasPop2D.Strategy interface include 2D graphical visualizations of the geometry of the population where nodes display the color coded strategy of each individual.
HasPop3D	Modules that implement the HasPop3D interface request a graphical view to visualize a 3D representation of the geomtery of the population in their GUI: Pop3D for GWT and none for JRE (java3d has long been retired).
HasPop3D.Fitness	Modules that implement the HasPop3D.Strategy interface include 3D graphical visualizations of the geometry of the population where nodes display the color coded fitness of each individual.
HasPop3D.Strategy	Modules that implement the HasPop3D.Strategy interface include 2D graphical visualizations of the geometry of the population where nodes display the color coded strategy of each individual.
HasS3	Modules that implement the HasS3 interface request a graphical view to visualize the mean state of the population in the simplex \(S_3\) as a function of time in their GUI: S3 for GWT and MVDS3 for JRE.
Histogram	The view to display a histogram of various quantities of the current EvoLudo model.
HistoGraph	Histogram graph for displaying data in bins.
IBS	Base class for individual based simulation models, IBS.
IBS.Event	Enumeration of possible events in focal population.
IBS.HasIBS	Modules that offer individual based simulation models must implement this interface.
IBS.HasIBS.CGroups	Modules that offer individual based simulation models with continuous traits and interactions in groups must implement this interface.
IBS.HasIBS.CPairs	Modules that offer individual based simulation models with continuous traits and pairwise interactions must implement this interface.
IBS.HasIBS.DGroups	Modules that offer individual based simulation models with discrete traits and interactions in groups must implement this interface.
IBS.HasIBS.DPairs	Modules that offer individual based simulation models with discrete traits and pairwise interactions must implement this interface.
IBS.HasIBS.MCGroups	Modules that offer individual based simulation models with continuous traits and interactions in groups must implement this interface.
IBS.HasIBS.MCPairs	Modules that offer individual based simulation models with multiple continuous traits and pairwise interactions must implement this interface.
IBS.MigrationType	Types of species updates (only relevant for multi-species models): none no migration D diffusive migration (exchange of neighbors) B birth-death migration (fit migrates, random death). d death-birth migration (random death, fit migrates).
IBS.ScoringType	Schedules for resetting individual payoffs/fitness: onchange Reset when changing trait (only after updating from reference model with a different trait) onupdate Reset when updating from reference individual (not necessarily a change in trait) ephemeral Determine payoffs/fitness calculated only for updating
IBS.Statistics	The class managing the settings for statistics mode.
IBS.Statistics.Type	Type of statistics.
IBSC	Base class for individual based simulation models, IBS, with a single or multiple continuous traits/strategies.
IBSC.Init	The initialization of populations with continuous traits.
IBSC.Init.Type	Type of initial density distribution of traits.
IBSCPopulation	The core class for individual based simulations with a single continuous trait/strategy.
IBSD	Base class for individual based simulation models, IBS, with discrete traits/strategies.
IBSD.Init	The initialization of populations with discrete traits.
IBSD.Init.Type	Type of initial density distribution.
IBSD.OptimizationType	Type of optimizations.
IBSDPopulation	The core class for individual based simulations with discrete traits/strategies.
IBSDPopulation.link	A minimalstic helper class (or data structure) to represent a single directed link in the network structure.
IBSGroup	Interaction and reference groups in IBS models.
IBSGroup.SamplingType	Types of sampling of groups for interactions or references: none no interactions all interact with all neighbours random interact with n random neighbours
IBSMCPopulation	The core class for individual based simulations with multiple continuous traits/strategies.
IBSPopulation	The core class for individual based simulations.
InputEvent	Represents a native input event.
InputHandler	Handler interface for InputEvent events.
Line2D	Utility class for deal with straight (infinite) lines in 2D.
LineGraph	Graph to visualize time series data.
Map2Fitness	Map scores/payoffs to fitness and vice versa.
Map2Fitness.Map	Enum representing the different types of payoff/score to fitness maps
Markers	The class to manage customised markers for graphs.
Mean	The view to display graphs with time series data.
MersenneTwister	MersenneTwister and MersenneTwisterFast
MersenneTwister.Chronometer	The minimal Chronometer interface is only used to hide differences for measuring execution time in JRE and GWT.
MersenneTwister.StopWatch	Minimal implementation of Chronometer.
MilestoneListener	All MilestoneListener's get informed about milestones and state changes of the core of EvoLudo modules.
Mode	Modes of the model.
Model	Interface for EvoLudo models to interact with Modules, which define interactions (or games), and the engine EvoLudo, which manages the (un)loading and execution of different models based on what model types the module supports.
Module	Parent class of all EvoLudo modules.
Moran	The module for investigating the evolutionary dynamics in the classical Moran process with two types of individuals that have constant fitness values.
Mutation	The abstract superclass to implement mutations in IBS models with discrete or continuous traits.
Mutation.Continuous	The class to implement mutations in continuous IBS models.
Mutation.Continuous.Type	Mutation types.
Mutation.Discrete	The class to implement mutations in discrete IBS models.
Mutation.Discrete.Type	Mutation types.
NativeJS	Collection of native javascript methods.
NetGames	Cooperation in dynamical networks.
Network	Abstract graphical representation for generic population geometries.
Network.LayoutListener	Interface for GUI elements that are interested in receiving updates regarding the process of laying out the network.
Network.Status	Status of the layout process of networks: Network.Status.HAS_LAYOUT network layout complete.
Network2D	Graphical representation of generic population geometries in 2D.
Network2DGWT	Graphical representation of generic population geometries in 2D.
Network3D	Graphical representation of generic population geometries in 3D.
Network3DGWT	Graphical representation of generic population geometries in 3D.
Node	Interface representing a (network) node in 2D or 3D space with a position and a radius.
Node2D	Class representing a (network) node in 2D space with position and radius.
Node3D	Class representing a (network) node in 3D space with position and radius.
NoninvertibleTransformException	The NoninvertibleTransformException class represents an exception that is thrown if an operation is performed requiring the inverse of an AffineTransform object but the AffineTransform is in a non-invertible state.
ODE	Common base class for all differential equations models.
ODE.HasDE	Methods that every Module must implement, which advertises numerical solutions based on differential equations.
ODE.HasODE	Additional methods that must be implemented by Modules that advertise numerical solutions based on ordinary differential equations.
ODE.InitType	Types of initial configurations.
ParaGraph	Parametric graph for displaying trajectories in phase plane.
Path2D	Adapted from java.awt.geom.Path2D, merged with PathIterator and stripped to the bare bones.
Path2D.Iterator	Adapted from java.awt.geom.PathIterator, merged with Path2D Iterator and CopyIterator.
PathIterator	The PathIterator interface provides the mechanism for objects that implement the Shape interface to return the geometry of their boundary by allowing a caller to retrieve the path of that boundary a segment at a time.
PDE	Numerical integration of partial differential equations for reaction-diffusion systems based on Euler's method (fixed step size)
PDE.HasPDE	Methods that every Module must implement, which advertises numerical solutions based on partial differential equations.
PDE.InitType	Types of initial configurations.
PDESupervisor	Supervisor of reaction-diffusion processes.
PDESupervisorGWT	Supervisor of reaction-diffusion processes.
Phase2D	The view to display time series of data as a trajectory in a 2D phase plane.
PlayerUpdate	The implementation of player updates.
PlayerUpdate.Type	Player update types.
Plist	Utility class to read and write plist-files with some customizations to store the bit-patterns for doubles to allow for perfect reproducibility.
PlistParser	Basic parser for plist-files.
PlistReader	Iterator over tags in plist-string.
PlistTag	Entry in plist-string.
Point	Interface representing a point in 2D or 3D space determined by Cartesian coordinates.
Point2D	Class representing a point in 2D Cartesian space.
Point3D	Class representing a point in 3D Cartesian space.
Pop2D	The view to display configuration of the current state of the model in 2D.
Pop3D	The view to display configuration of the current state of the model in 3D.
PopGraph2D	The graphical representation of network structures in 2D.
PopGraph3D	The graphical representation of network structures in 3D.
PopulationUpdate	The implementation of population updates.
PopulationUpdate.Type	Types of species updates (only relevant for multi-species models): synchronous Synchronized population updates.
Rectangle2D	Utility class for dealing with rectangles in 2D.
Resources	The interface to provide access to GWT specific resource files.
RingBuffer<T>	Non-blocking ring buffer.
RNGDistribution	Collection of distributions of random numbers based on the Mersenne Twister.
RNGDistribution.Binomial	Binomially distributed random numbers with support {0,1,2,3,..., n}.
RNGDistribution.Exponential	Exponentially distributed random numbers with support [0.0, Double.MAX_VALUE).
RNGDistribution.Geometric	Geometrically distributed random numbers with support {1,2,3,...}.
RNGDistribution.Gillespie	Gillespie algorithm for selecting integers with support {0,1,2,3,..., n} but with different weights.
RNGDistribution.Normal	Normally (or Gaussian) distributed random numbers with support (-Double.MAX_VALUE, Double.MAX_VALUE).
RNGDistribution.TestCommand	The interface to execute commands in a manner that is agnostic to the implementation details regarding GWT or JRE environments.
RNGDistribution.Uniform	Uniformly distributed random numbers with support [min, max).
RSP	Cyclical dynamics of the rock-scissors-paper game.
RungeKutta	Implementation of Runge-Kutta method with adaptive step size for the numerical integration of systems of differential equations.
S3	The view to display time series of data as a trajectory on the \(S_3\) simplex.
S3Graph	Graph for the simplex \(S_3\).
S3Map	Default mapping of data to simplex \(S_3\) projections.
scanCSD	Simulations of the evolution of continuous investement levels in social dilemmas.
SDE	Integrator for stochastic differential equations (SDE) based on Euler's method.
SDE.HasSDE	Interface for modules that implement stochastic differential equations (SDE).
Segment2D	Utility class for deal with (finite) line segments in 2D.
simCDL	Simulations to investigate the role of volunteering in public goods games.
simCDLP	Simulations to investigate peer punishment in the voluntary public goods game.
simCDLPQ	Simulations of peer- versus pool-punishment in voluntary public goods games.
simMoran	Simulations to investigate the Moran process on graph structured populations.
simTBT	Simulation of the two player, two trait model.
simTraits	Simulations to investigate individual based simulations versus stochastic differential equations for modelling the evolutionary dynamics of populations with pairwise interactions and d strategic traits.
Slider	A standard slider widget.
SpeciesUpdate	The implementation of population updates.
SpeciesUpdate.Type	Types of species updates (only relevant for multi-species models): size focal species selected proportional to their size fitness focal species selected proportional to their total fitness turns one species is selected after another. sync simultaneous updates of all species (not yet implemented). For size and fitness selection is also proportional to the update rate of each species.
TBT	The module for investigating the evolutionary dynamics in the classical 2×2 games.
TestEvoLudo	TestEvoLudo is a test suite for EvoLudo.
TestEvoLudo.ConsoleColors	The control codes for changing the style of the console output.
TextLogFormatter	Formats LogRecords into XML/XHTML compliant text
Tooltip	Tooltip extension to GWT's user interface.
Tooltip.Provider	Provider interface for classes that are responsible for supplying the contents of the tooltip.
TooltipProvider	Views that provide more sophisticated tooltips should implement this interface.
TooltipProvider.Index	Views that provide extended tooltips for specific locations that go beyond the capabilities of the BasicTooltipProvider should implement this interface.
TooltipProvider.Parametric	Views that provide extended tooltips for specific (scaled) coordinates (x,y) on a parametric plot that go beyond the capabilities of the BasicTooltipProvider should implement this interface.
TooltipProvider.Simplex	Views that provide extended tooltips for specific (scaled) coordinates (x,y) on a simplex plot that go beyond the capabilities of the BasicTooltipProvider should implement this interface.
TrackballControls	Trackball controls for 3D views adapted from Parallax and threejs
Type	Model types that modules may support.
Vector2D	Utility class for 2D vector manipulations.
Vector3D	Utility class for 3D vector manipulations.
XMLCoder	Encode and decode XML strings.