Package org.evoludo.simulator.exec

Class simCDL.simCDLIBS

Object

IBSPopulation

IBSDPopulation

CDL.IBSPop

simCDLIBS

Enclosing class:

simCDL

class simCDL.simCDLIBS
extends CDL.IBSPop

The simulation for the CDL module. This class adds specific initializations for measuring fixation probabilities and absorption times for given initial strategy frequencies.

Field Summary

Fields inherited from class IBSDPopulation

accuTypeScores, groupmodule, init, initTypeCount, module, mutation, optimizeMoran, pairmodule, strategies, strategiesScratch, strategiesTypeCount

Fields inherited from class IBSPopulation

adjustScores, competition, compGroup, debugFocal, debugModel, debugModels, debugNModels, debugSame, distrMigrants, engine, fitness, groupScores, hasLookupTable, interaction, interactions, interGroup, isMultispecies, isNeutral, logger, map2fit, maxEffScoreIdx, maxFitness, maxScore, migrationType, minFitness, minScore, nMixedInter, nPopulation, nTraits, pAddwire, playerScoreAveraged, playerScoring, pMigration, pRewire, rng, scores, smallScores, staticmodule, sumFitness, tags, typeFitness, typeScores, VACANT

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	simCDLIBS(EvoLudo engine, CDL module)	Create a new simulation.

Method Summary

Modifier and Type	Method	Description
void	init()	Initialize the model.

Methods inherited from class CDL.IBSPop

initKaleidoscope

Methods inherited from class IBSDPopulation

adjustGameScoresAt, adjustPairGameScoresAt, adjustScoreAt, adjustScoreAt, becomesVacantAt, check, checkConvergence, commitStrategies, commitStrategyAt, countTraits, debugMarkChange, doAdjustScores, encodeStrategies, getFitnessAt, getFitnessHistogramData, getInit, getInitialTraits, getMeanFitness, getMeanTraits, getMonoScore, getPopulationSize, getScoreAt, getStatus, getStrategiesTypeCount, getTraitData, getTraitNameAt, getTraits, haveSameStrategy, initFrequency, initMono, initMutant, initStripes, initTemperature, initUniform, isConsistent, isMonomorphic, isSameStrategy, isVacantAt, maybeMutateAt, maybeMutateMoran, mouseHitNode, mutateAt, playGroupGameAt, playPairGameAt, preferredPlayerBest, prepareStrategies, reset, resetScoreAt, resetScores, resetStrategies, restoreFitness, restoreStrategies, setInit, setInitialTraits, setOpponentPop, setScoreAt, stripGroupVacancies, stripVacancies, swapStrategies, updateFromModelAt, updateMixedMeanScores, updatePlayerBestResponse, updatePlayerEcologyAt, updatePlayerMoranBirthDeath, updatePlayerMoranDeathBirth, updatePlayerMoranDeathBirth, updatePlayerMoranImitate, updateScoreAt, updateScores, updateStrategiesTypeCount, yalpGroupGameAt

Methods inherited from class IBSPopulation

checkGeometry, createCompetitionGeometry, createInteractionGeometry, debugScores, debugUpdatePopulationAt, doBirthDeathMigration, doDeathBirthMigration, doDiffusionMigration, doMigration, doSyncMigration, encodeFitness, encodeGeometry, encodeInteractions, generateGeometry, getCompetitionGeometry, getCompGroup, getFitness, getFitnessData, getFitnessNameAt, getFitnessNameAt, getInteractionGeometry, getInteractionsAt, getInterGroup, getMaxScore, getMigrationProb, getMigrationType, getMinScore, getModule, getNMean, getPlayerScoreAveraged, getPlayerScoring, getPopulationUpdate, getScoreNameAt, getScores, getSyncFraction, getTagAt, getTagData, getTagNameAt, getTags, getTotalFitness, migrateMoran, mouseHitNode, mutate, nextBinomial, parseGeometry, pickFitFocalIndividual, pickFitFocalIndividual, pickFitNeighborAt, pickFitNeighborAt, pickFocalIndividual, pickFocalIndividual, pickFocalSite, pickFocalSite, pickNeighborSiteAt, playGameAt, playGameSyncAt, processScore, random01, random01d, random0n, random0N, randomGaussian, removeScoreAt, removeScoreAt, restoreGeometry, restoreInteractions, setAddwire, setConsistencyCheck, setMaxEffScoreIdx, setMigrationProb, setMigrationType, setPlayerScoreAveraged, setPlayerScoring, setPopulationUpdate, setRewire, setSyncFraction, setTagAt, srandom, step, swapScoresAt, updateEffScoreRange, updateFitnessAt, updateMinMaxScores, updatePlayerAsync, updatePlayerAsyncAt, updatePlayerAt, updatePlayerBest, updatePlayerBestHalf, updatePlayerEcology, updatePlayerMoranBirthDeathAt, updatePlayerMoranDeathBirthAt, updatePlayerMoranImitateAt, updatePlayerSwap, updateProportionalAbs, updateReplicatorHalf, updateReplicatorPlus, updateScoreAt, updateScoreAt, updateThermal

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

simCDLIBS

protected simCDLIBS(EvoLudo engine,
 CDL module)

Create a new simulation.

Parameters:

engine - the pacemaker for running the model

module - the module defining the interactions

Method Details

init

public void init()

Description copied from class: IBSPopulation

Initialize the model. All parameters must be consistent. Subclasses must override this method to generate the initial strategy configuration and call super.

Note: Initialization leaves the interaction and competition structures untouched

Overrides:

init in class IBSDPopulation

See Also:

• IBSPopulation.check()
• Model.init()